BoxCryptor seems not to work when accessing file with some programs:
1) in .NET, when accessing an SQLServer Compact edition database file, if this file is encrypted directory the program crashes saying it cannot open the file for the path is too long, while putting the file in an unencrypted directory with the same path length all works.
2) With the new version of TortoiseSVN 1.7.1 when trying to update/commit/browse a directory repository (file:///) placed on the encrypted directory it crashes saying "Serialized hash malformed". The same program works if the repository is on another unencrypted directory. Older version (TortoiseSVN 1.6.16) works also for encrypted directory.